Comparative genomics of Taphrina fungi causing varying degrees of tumorous deformity in plants.
Identifieur interne : 002320 ( Main/Exploration ); précédent : 002319; suivant : 002321Comparative genomics of Taphrina fungi causing varying degrees of tumorous deformity in plants.
Auteurs : Isheng J. Tsai [Japon] ; Eiji Tanaka ; Hayato Masuya ; Ryusei Tanaka ; Yuuri Hirooka ; Rikiya Endoh ; Norio Sahashi ; Taisei KikuchiSource :
- Genome biology and evolution [ 1759-6653 ] ; 2014.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Ascomycota, Protéines fongiques, Tumeurs végétales.
- microbiologie : Magnoliopsida, Tumeurs végétales.
- physiologie : Gènes fongiques.
- Spécificité d'espèce, Évolution moléculaire.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : Fungal Proteins.
- genetics : Ascomycota, Plant Tumors.
- microbiology : Magnoliopsida, Plant Tumors.
- physiology : Genes, Fungal.
- Evolution, Molecular, Species Specificity.
Abstract
Taphrina fungi are biotrophic plant pathogens that cause plant deformity diseases. We sequenced the genomes of four Taphrina species-Taphrina wiesneri, T. deformans, T. flavorubra, and T. populina-which parasitize Prunus, Cerasus, and Populus hosts with varying severity of disease symptoms. High levels of gene synteny within Taphrina species were observed, and our comparative analysis further revealed that these fungi may utilize multiple strategies in coping with the host environment that are also found in some specialized dimorphic species. These include species-specific aneuploidy and clusters of highly diverged secreted proteins located at subtelomeres. We also identified species differences in plant hormone biosynthesis pathways, which may contribute to varying degree of disease symptoms. The genomes provide a rich resource for investigation into Taphrina biology and evolutionary studies across the basal ascomycetes clade.
DOI: 10.1093/gbe/evu067
PubMed: 24682155
PubMed Central: PMC4007546
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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We sequenced the genomes of four Taphrina species-Taphrina wiesneri, T. deformans, T. flavorubra, and T. populina-which parasitize Prunus, Cerasus, and Populus hosts with varying severity of disease symptoms. High levels of gene synteny within Taphrina species were observed, and our comparative analysis further revealed that these fungi may utilize multiple strategies in coping with the host environment that are also found in some specialized dimorphic species. These include species-specific aneuploidy and clusters of highly diverged secreted proteins located at subtelomeres. We also identified species differences in plant hormone biosynthesis pathways, which may contribute to varying degree of disease symptoms. The genomes provide a rich resource for investigation into Taphrina biology and evolutionary studies across the basal ascomycetes clade.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24682155</PMID><DateCompleted><Year>2015</Year><Month>02</Month><Day>12</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1759-6653</ISSN><JournalIssue CitedMedium="Internet"><Volume>6</Volume><Issue>4</Issue><PubDate><Year>2014</Year><Month>Apr</Month></PubDate></JournalIssue><Title>Genome biology and evolution</Title><ISOAbbreviation>Genome Biol Evol</ISOAbbreviation></Journal><ArticleTitle>Comparative genomics of Taphrina fungi causing varying degrees of tumorous deformity in plants.</ArticleTitle><Pagination><MedlinePgn>861-72</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1093/gbe/evu067</ELocationID><Abstract><AbstractText>Taphrina fungi are biotrophic plant pathogens that cause plant deformity diseases. We sequenced the genomes of four Taphrina species-Taphrina wiesneri, T. deformans, T. flavorubra, and T. populina-which parasitize Prunus, Cerasus, and Populus hosts with varying severity of disease symptoms. High levels of gene synteny within Taphrina species were observed, and our comparative analysis further revealed that these fungi may utilize multiple strategies in coping with the host environment that are also found in some specialized dimorphic species. These include species-specific aneuploidy and clusters of highly diverged secreted proteins located at subtelomeres. We also identified species differences in plant hormone biosynthesis pathways, which may contribute to varying degree of disease symptoms. The genomes provide a rich resource for investigation into Taphrina biology and evolutionary studies across the basal ascomycetes clade.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Tsai</LastName><ForeName>Isheng J</ForeName><Initials>IJ</Initials><AffiliationInfo><Affiliation>Division of Parasitology, Faculty of Medicine, University of Miyazaki, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tanaka</LastName><ForeName>Eiji</ForeName><Initials>E</Initials></Author><Author ValidYN="Y"><LastName>Masuya</LastName><ForeName>Hayato</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Tanaka</LastName><ForeName>Ryusei</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Hirooka</LastName><ForeName>Yuuri</ForeName><Initials>Y</Initials></Author><Author ValidYN="Y"><LastName>Endoh</LastName><ForeName>Rikiya</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Sahashi</LastName><ForeName>Norio</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>Kikuchi</LastName><ForeName>Taisei</ForeName><Initials>T</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D003160">Comparative Study</PublicationType><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Genome Biol Evol</MedlineTA><NlmUniqueID>101509707</NlmUniqueID><ISSNLinking>1759-6653</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005656">Fungal Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001203" MajorTopicYN="N">Ascomycota</DescriptorName><QualifierName UI="Q000235" 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uniqKey="Tanaka E" first="Eiji" last="Tanaka">Eiji Tanaka</name><name sortKey="Tanaka, Ryusei" sort="Tanaka, Ryusei" uniqKey="Tanaka R" first="Ryusei" last="Tanaka">Ryusei Tanaka</name></noCountry><country name="Japon"><noRegion><name sortKey="Tsai, Isheng J" sort="Tsai, Isheng J" uniqKey="Tsai I" first="Isheng J" last="Tsai">Isheng J. 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